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António Pedro Branco, Cátia Vaz and Alexandre P. Francisco
There are several tools available to infer phylogenetic trees, which depict the evolutionary relationships among biological entities such as viral and bacterial strains in infectious outbreaks or cancerous cells in tumor progression trees. These tools re...
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Levente Fazekas, Boldizsár Tüu-Szabó, László T. Kóczy, Olivér Hornyák and Károly Nehéz
Flow-shop scheduling problems are classic examples of multi-resource and multi-operation scheduling problems where the objective is to minimize the makespan. Because of the high complexity and intractability of the problem, apart from some exceptional ca...
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Simone Ciccolella, Gianluca Della Vedova, Vladimir Filipovic and Mauricio Soto Gomez
Being able to infer the clonal evolution and progression of cancer makes it possible to devise targeted therapies to treat the disease. As discussed in several studies, understanding the history of accumulation and the evolution of mutations during cance...
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Sergiu Zaharia, Traian Rebedea and Stefan Trausan-Matu
The research presented in the paper aims at increasing the capacity to identify security weaknesses in programming languages that are less supported by specialized security analysis tools, based on the knowledge gathered from securing the popular ones, f...
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Zhenwei Yang, Hang Lv, Xinyi Wang, Hengrui Yan and Zhaofeng Xu
In recent years, inrush water has hampered the regular mining of coal mines, and the proper identification of the source of inrush water is critical to the prevention and management of water hazards in mines. This paper extracts the standard water chemis...
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Tianle Li, Minrui Zheng, Xiaoli Wang and Xinqi Zheng
Urban function evolution (UFE) has become more and more complex in emerging cities. However, insufficient theoretical support exists for the visual expression of the spatial correlation between UFE patterns. In order to fill this gap, we use the 2013 and...
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Aijun Cui, Yongjiang Xu, Kiyoshi Kikuchi, Yan Jiang, Bin Wang, Takashi Koyama and Xuezhou Liu
To clarify the population genetic structure, intrapopulation diversity, and interpopulation differentiation of yellowtail kingfish (Seriola aureovittata), we sampled 143 individuals from five collections of yellowtail kingfish: farmed (n = 30) and wild (...
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Nadia El-Mabrouk
Syntenies are genomic segments of consecutive genes identified by a certain conservation in gene content and order. The notion of conservation may vary from one definition to another, the more constrained requiring identical gene contents and gene orders...
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David Schaller, Manuela Geiß, Marc Hellmuth and Peter F. Stadler
Best match graphs (BMGs) are vertex-colored digraphs that naturally arise in mathematical phylogenetics to formalize the notion of evolutionary closest genes w.r.t. an a priori unknown phylogenetic tree. BMGs are explained by unique least resolved trees....
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Qiaoji Xu, Lingling Jin, James H. Leebens-Mack and David Sankoff
The RACCROCHE pipeline reconstructs ancestral gene orders and chromosomal contents of the ancestral genomes at all internal vertices of a phylogenetic tree. The strategy is to accumulate a very large number of generalized adjacencies, phylogenetically ju...
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