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António Pedro Branco, Cátia Vaz and Alexandre P. Francisco
There are several tools available to infer phylogenetic trees, which depict the evolutionary relationships among biological entities such as viral and bacterial strains in infectious outbreaks or cancerous cells in tumor progression trees. These tools re...
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Hang Ye, Hengzhao Liu, Mian Han, Naiyu Zhang, Xiaolong Feng, Ting Gao, Dingfan Lei, Haochen Li, Zhimei Gao, Yu Su, Min Chai, Huijuan Zhou and Yiling Wang
Plant NAPDH oxidase (NOX) gene family members are critical producers of ROS and play crucial roles in plant signaling, development, and stress responses. Opisthopappus taihangensis is a pivotal wild genetic resource in Asteraceae. To date, little knowled...
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Niki Mougiou, Persefoni Maletsika, Aristarhos Konstantinidis, Katerina Grigoriadou, George Nanos and Anagnostis Argiriou
Almonds are one of the most popular nuts, cultivated in countries with Mediterranean climates. In an almond orchard of the self-incompatible cultivar ?Ferragnes? in Greece, a tree with different morphological characteristics and signs of self-compatibili...
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Samuel R. Schrader and Eren Gultepe
The evaluation of similarities between natural languages often relies on prior knowledge of the languages being studied. We describe three methods for building phylogenetic trees and clustering languages without the use of language-specific information. ...
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Jeonghoon Han, Han-Jun Kim, Kyun-Woo Lee and Young-Ung Choi
In this study, we document the first recorded range extension of the genus Synaphobranchus from the East Mariana Basin in the Western Pacific Ocean. We sequenced the complete mitochondrial (mt) genome of two deep-sea eels (Synaphobranchus brevidorsalis a...
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Jeonghoon Han, Jong Guk Kim, O-Nam Kwon, Jordan Jun Chul Park, Kyun-Woo Lee and Young-Ung Choi
The geoduck clam is a high-value species in South Korea. However, the molecular and morphological characteristics of geoduck clams from the southern coast of South Korea remain unexamined. The accurate identification of native geoduck clams is crucial fo...
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Giusy D?Attoma, Angelantonio Minafra, Pasquale Saldarelli and Massimiliano Morelli
Wisteria vein mosaic virus (WVMV) is a member of the genus Potyvirus, found to be associated with the Wisteria mosaic disease (WMD). In 2022, severe symptoms resembling WMD were observed on the foliage of a Chinese wisteria (Wisteria sinensis) tree growi...
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Tao Zhang, Ju Cai, Sisi Wang, Litang Lv, Dandan Yuan, Xiaofang Zeng, Jianrong Li and Yan Li
The ERF gene family is widely present in plants and has crucial regulatory importance in plant seed development, organ morphogenesis, the synthesis of secondary metabolites, and coping with abiotic stresses such as cold and drought. In this study, 90 mem...
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Ruriko Yoshida, Lillian Paul and Peter Nesbitt
Unweighted Pair Group Method with Arithmetic Mean (UPGMA) is one of the most popular distance-based methods to reconstruct an equidistant phylogenetic tree from a distance matrix computed from an alignment of sequences. Since we use equidistant trees as ...
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Elad Nehoray Rachmilovitz, Omri Shabbat, Maayan Yerushalmy and Baruch Rinkevich
Accurate identification of scleractinian coral species is fundamental for proper biodiversity estimates, for aiding in efforts of reef monitoring, conservation, restoration, and for the management of coral reefs. Here, we provide the first DNA barcoding ...
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